Studying Microarray Gene Expression Data of Schizophrenic Patients for Derivation of A Diagnostic Signature Through The Aid of Machine Learning
ثبت نشده
چکیده
Schizophrenia (SZ) is a serious psychiatric disease, with a complex genetic basis that affects around 1% of the population worldwide. The symptoms of the disease are divided into positive, negative and cognitive symptoms. Positive symptoms include hallucinations, delusions as well as disorganised speech and behaviour. Negative symptoms include anhedonia, social withdrawal, and lack of motivation and energy. Finally, cognitive symptoms involve cognitive dysfunctions of patients suffering from SZ. Pharmacological treatment of the disease mostly deals with the positive, psychotic symptoms of the disease, but does not improve cognitive and social dysfunction. Moreover, the etiology of SZ predicates upon a combination of genetic and environmental factors, probably in early life, that affect neurogenesis and neuronal plasticity [1]. DNA microarray technologies enabling genome-wide gene expression profiling have been intensely exploited in the last decade, in order to promote the elucidation of the underlying biological mechanisms of SZ [2-5]. These studies, through the high dimensional data that they yield, can prove to be very useful for the generation of diagnostic biomarker signatures in the management of SZ. The usefulness of these data is based on the fact that they may reveal several genes that act synergistically. Probably, the genes that present these synergistic effects with other genes cannot be associated with SZ on their own. The importance of the development of classification models in SZ is great as, at the moment, the diagnosis of the disease is based exclusively on the evaluation of the clinical symptoms after they have manifested. Despite much research effort, some of the most crucial questions regarding SZ have not been answered. The heterogeneity and the multi-factorial background of SZ suggest the study of this disease through statistical methods for the identification of patterns in the data. Differentially expressed genes occurring from microarray experiments can be utilized as classifying biomarkers gain and can reveal underlying genetic factors in relation to important psychiatric diseases, such as SZ [6].
منابع مشابه
Gene Identification from Microarray Data for Diagnosis of Acute Myeloid and Lymphoblastic Leukemia Using a Sparse Gene Selection Method
Background: Microarray experiments can simultaneously determine the expression of thousands of genes. Identification of potential genes from microarray data for diagnosis of cancer is important. This study aimed to identify genes for the diagnosis of acute myeloid and lymphoblastic leukemia using a sparse feature selection method. Materials and Methods: In this descriptive study, the expressio...
متن کاملFeature Selection and Classification of Microarray Gene Expression Data of Ovarian Carcinoma Patients using Weighted Voting Support Vector Machine
We can reach by DNA microarray gene expression to such wealth of information with thousands of variables (genes). Analysis of this information can show genetic reasons of disease and tumor differences. In this study we try to reduce high-dimensional data by statistical method to select valuable genes with high impact as biomarkers and then classify ovarian tumor based on gene expression data of...
متن کاملExploring Gene Signatures in Different Molecular Subtypes of Gastric Cancer (MSS/ TP53+, MSS/TP53-): A Network-based and Machine Learning Approach
Gastric cancer (GC) is one of the leading causes of cancer mortality, worldwide. Molecular understanding of GC’s different subtypes is still dismal and it is necessary to develop new subtype-specific diagnostic and therapeutic approaches. Therefore developing comprehensive research in this area is demanding to have a deeper insight into molecular processes, underlying these subtypes. In this st...
متن کاملDiagnosis of Breast Cancer Subtypes using the Selection of Effective Genes from Microarray Data
Introduction: Early diagnosis of breast cancer and the identification of effective genes are important issues in the treatment and survival of the patients. Gene expression data obtained using DNA microarray in combination with machine learning algorithms can provide new and intelligent methods for diagnosis of breast cancer. Methods: Data on the expression of 9216 genes from 84 patients across...
متن کاملPrediction of blood cancer using leukemia gene expression data and sparsity-based gene selection methods
Background: DNA microarray is a useful technology that simultaneously assesses the expression of thousands of genes. It can be utilized for the detection of cancer types and cancer biomarkers. This study aimed to predict blood cancer using leukemia gene expression data and a robust ℓ2,p-norm sparsity-based gene selection method. Materials and Methods: In this descriptive study, the microarray ...
متن کامل